Monthly Archives: August 2015

AMLab opening talk by Joost Kok

You are cordially invited for the opening talk of AmLab, the Amsterdam Machine Learning Lab. Afterwards there will be drinks at the Academisch Kwartier.

Date: Tuesday September 1, 2015
Time: 15:00-16:00
Location: SP C1.112

Speaker: Joost Kok, Leiden Institute of Advanced Computer Science

Title: Machine Learning in Scientific Applications

Abstract: In this presentation, we will show some of our applications of Machine Learning
in the fields of Life Science and Physics. In particular, we will look at applications where experimental data is visualized, interpreted and explained. We will also argue that Machine Learning can learn from these applications.

Talk by Karen Sachs (Stanford University)

You are cordially invited for the following talk:

Date: Monday August 31, 2015
Time: 11:00-12:00
Location: SP C3.163

Speaker: Karen Sachs, Stanford University School of Medicine

Title: Use of single cell proteomics measurements for elucidation of biomolecular regulatory relationships

Abstract: We have previously introduced the application of probabilistic models for elucidation of statistical relationships from single cell proteomic data (Sachs et al, Science 2005), an approach enabled by the key insight that each cell may be considered an observation of the underlying biological system. The application of this approach has been partially limited by the low dimensionality of the data modality (flow cytometry), which enabled measurements of only up to ~10 proteins of interest per cell. In 2011, we introduced a next generation single cell proteomic technology, mass cytometry or CyTOF (cytometry time of flight, Bendall et all, Science 2011), which enables quantification of 30-40 parameters per cell. In this talk, I will describe the CyTOF technology and illuminate its advantages and potential follies. I will then discuss my perspective on causal modeling of single cell data and what hurdles remain in this application.